Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs28368693 | chr17:57478615 | T/C | 1.08E-5 | 483 | 16.07 | 15.83 | 15.17 | KM Plot |
| THCA | rs28372210 | chr7:16464511 | A/G | 5.5E-10 | 475 | 15.07 | 17.53 | 16.53 | KM Plot |
| THCA | rs28374799 | chr7:76409668 | C/G | 2.87E-9 | 483 | 15.32 | 16.87 | 15.15 | KM Plot |
| THCA | rs2838505 | chr21:45583903 | A/G | 8.57E-5 | 488 | 16.5 | 14.8 | 15.98 | KM Plot |
| THCA | rs2838506 | chr21:45583922 | A/G | 0.000131 | 490 | 16.5 | 16.2 | 15.7 | KM Plot |
| THCA | rs28390136 | chr7:30116850 | A/G | 9.49E-5 | 486 | 15.13 | 16.63 | 15.32 | KM Plot |
| THCA | rs28403215 | chr4:3172439 | C/T | 0.000158 | 482 | 16.8 | 14.77 | 14.7 | KM Plot |
| THCA | rs28409265 | chr15:41539404 | G/A | 0.000214 | 485 | 15.15 | 15.9 | 17.62 | KM Plot |
| THCA | rs28452000 | chr7:30041342 | T/C | 2.95E-5 | 478 | 15 | 16.63 | 15.32 | KM Plot |
| THCA | rs28454849 | chr1:156892537 | G/T | 7.03E-7 | 480 | 16.63 | 14.93 | 11.3 | KM Plot |
| THCA | rs28464934 | chr7:76418026 | T/C | 1.77E-6 | 481 | 15.33 | 17.07 | 15.67 | KM Plot |
| THCA | rs28473238 | chr9:36027089 | C/T | 1.07E-5 | 468 | 15.7 | 15.08 | 17.93 | KM Plot |
| THCA | rs28475108 | chr14:36142579 | T/A | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs28475270 | chr7:76410232 | T/C | 3.39E-9 | 481 | 15.33 | 16.77 | 15.15 | KM Plot |
| THCA | rs28479904 | chr15:41268305 | G/T | 0.000223 | 476 | 15.15 | 16.37 | 17.07 | KM Plot |